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Post-doc Natural Language Processing and semantic enrichment for FAIR data in healthcare

Apply before: 24 May 2019
Type of Employment: Fixed Term Contract
Working hours: 36 hours per week
Discipline: AMC Medical Research (AMR)

What you are going to do

Collection of high-quality, interoperable data and knowledge is crucial for better development, training, testing, and application of models that can contribute to improvement of healthcare. For collection and representation of data and knowledge novel contributions need to be devised and combined for a variety of areas including natural language processing, semantic web, FAIR data, and healthcare interoperability standards. The department of Medical Informatics at Amsterdam UMC, location AMC is one of the major Dutch research departments that studies semantic interoperability and FAIR data in healthcare. This has led to involvement in two EU-funded projects, one of which focuses on FAIR data for rare diseases (EJP Rare Diseases), and the other on demonstration of the impact of FAIR data on health outcomes and health research (FAIR4Health).We seek a Post-doc to participate in these leading-edge projects by playing a pivotal role in improved quality and interoperability of healthcare data and knowledge. You will participate in the broader scope of the semantic interoperability research, both independently and in collaboration with the PhD-researchers. Tasks include: selection, application, and further development of NLP-techniques to perform named entity recognition and context detection on (Dutch) healthcare data, and to speed up the process of making data FAIR. You will: perform research, both independently and jointly with the PhD-researchers, on NLP, interoperability, and analysis on semantically rich data; participate in attracting new research, and supervise students at BSc- and MSc-level.

What we expect from you

You have completed training at PhD-level in a relevant field, e.g., medical informatics, bio-informatics, or computer science. You have experience with supervision of students / junior researchers, with working in an international setting, and with (co-)writing grant applications. You have hands-on skills in working with Python, R, and preferably other programming languages and semantic web tools (such as Protégé). Understanding of the specifics of data and knowledge in healthcare is advantageous. You are curious, creative, and solution-driven, combining a drive to understand with an intent to make things work. Your English writing skills are excellent, you have a good understanding of Dutch or are willing to improve your understanding. You are able to communicate with a broad audience, including clinicians and technicians, but also the European research community of the projects. You are accurate, ambitious, and independent without being solitary. You are flexible in time and location, as the work will not be restricted to regular business hours or to Amsterdam.

Where you are going to work

You will work at the department of Medical Informatics in Amsterdam UMC, location AMC. This department hosts over 50 people (researchers, software engineers, data managers, lecturers, and support staff) of which about 20 are PhD-researchers. The research group on semantic interoperability in this department currently consists of 4 external and 3 on-site (pre-)PhD-researchers, supervised by an associate professor and 2 full professors.

What we offer you

We offer you ample opportunity for development, deepening and broadening, additional training and a place to grow! Working at AMR means working in an inspiring and professional environment where development is encouraged in every respect.

  • The maximum gross monthly salary based on a 36-hour work week is € 4.361,- (scale 10 CAO UMC).
  • The base salary does not include holiday pay (8%) and a year-end bonus (8.3%).
  • We offer a contract for 1 year with an intended extension of 3 more years.
  • In addition to excellent accessibility by public transport, AMC also has a sufficient number of parking spaces for employees.
  • Pension is accrued at Be Frank.

For an overview of all our other terms of employment, see www.werkenbijamc.nl/arbeidsvoorwaarden-amr

Let’s meet

If you would like to apply directly, please use the ‘apply’ button on this page.
If you would like more information, please feel free to contact Ronald Cornet (Universitair hoofddocent), via r.cornet@amc.uva.nl.

We look forward to meeting you!